Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs78087029 chr5:178216133 C/T 3.27E-5 498 31.47 34.4 24.9 KM Plot
THCA rs78103352 chr9:123774605 C/T 2.87E-5 502 31.7 31.37 21.97 KM Plot
THCA rs78144889 chr2:87027727 A/G 6.71E-8 502 32.82 28.23 32.1 KM Plot
THCA rs78214351 chr10:104822688 A/G 6.92E-14 503 31.27 35.33 32.1 KM Plot
THCA rs78216286 chr10:94420817 C/T 0.000124 500 31.47 33.87 18.55 KM Plot
THCA rs78239375 chr11:47914958 G/C 1.44E-9 493 31.47 33.27 27.63 KM Plot
THCA rs78384860 chr10:105003019 G/T 0.000146 498 31.03 35.6 32.1 KM Plot
THCA rs78425300 chr16:79271246 C/A 8.47E-12 493 31.47 31.97 19.35 KM Plot
THCA rs78451826 chr7:44342821 A/G 1.56E-5 495 31.87 30.53 18.65 KM Plot
THCA rs78474945 chr7:32768409 T/TC 0.000103 495 31.43 32.9 31.97 KM Plot
THCA rs78490036 chr5:178214878 G/C 3.24E-5 499 31.47 34.83 24.9 KM Plot
THCA rs78491489 chr7:44335828 C/T 1.41E-5 501 31.9 29.73 18.43 KM Plot
THCA rs78509399 chr3:97200528 C/T 8.39E-7 503 31.43 33.97 29.17 KM Plot
THCA rs78512367 chr7:43208273 G/T 9.96E-8 492 31.7 31.37 31.78 KM Plot
THCA rs78558858 chr18:13822658 G/A 1.27E-5 501 31.42 33.4 50 KM Plot